Detailed information of SNP:
|
SNP ID:
sf0708622566(Gbrowse)
Chromosome: chr07 Position: 8622566 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 91.71% | 8.29% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 378 | 74.87% | 25.13% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 253 | 69.57% | 30.43% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 38 | 71.05% | 28.95% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708622566 | G->A | INTERGENIC | None |