Detailed information of SNP:
|
SNP ID:
sf0708671272(Gbrowse)
Chromosome: chr07 Position: 8671272 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 54.08% | 45.92% |
| All Indica | 795 | 92.33% | 7.67% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708671272 | C->T | INTERGENIC | None |