Detailed information of SNP:
|
SNP ID:
sf0708675940(Gbrowse)
Chromosome: chr07 Position: 8675940 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.46% | 43.54% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708675940 | G->A | INTERGENIC | None |