Detailed information of SNP:
|
SNP ID:
sf0708680072(Gbrowse)
Chromosome: chr07 Position: 8680072 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 51.07% | 48.93% |
| All Indica | 792 | 87.12% | 12.88% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 372 | 88.71% | 11.29% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708680072 | C->T | INTERGENIC | None |