Detailed information of SNP:
|
SNP ID:
sf0708737731(Gbrowse)
Chromosome: chr07 Position: 8737731 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 55.79% | 44.21% |
| All Indica | 789 | 94.93% | 5.07% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 65 | 4.62% | 95.38% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708737731 | T->C | INTERGENIC | None |