Detailed information of SNP:
|
SNP ID:
sf0708746200(Gbrowse)
Chromosome: chr07 Position: 8746200 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 55.91% | 44.09% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 494 | 1.01% | 98.99% |
| Aus | 64 | 3.12% | 96.88% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708746200 | A->G | INTERGENIC | None |