Detailed information of SNP:
|
SNP ID:
sf0708764172(Gbrowse)
Chromosome: chr07 Position: 8764172 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.77% | 44.23% |
| All Indica | 794 | 88.41% | 11.59% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708764172 | T->C | LOC_Os07g15210(LOC_Os07g15210.1) | INTRON |