Detailed information of SNP:
|
SNP ID:
sf0708793279(Gbrowse)
Chromosome: chr07 Position: 8793279 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 90.06% | 9.94% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 493 | 81.54% | 18.46% |
| Aus | 64 | 40.62% | 59.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 90 | 28.89% | 71.11% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708793279 | C->T | LOC_Os07g15250(LOC_Os07g15250.1) | INTRON |