Detailed information of SNP:
|
SNP ID:
sf0708796471(Gbrowse)
Chromosome: chr07 Position: 8796471 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 78.42% | 21.58% |
| All Indica | 762 | 61.68% | 38.32% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 38.11% | 61.89% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 203 | 69.95% | 30.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708796471 | C->T | LOC_Os07g15260(LOC_Os07g15260.1) | SNPs that introduce stop codons |