Detailed information of SNP:
|
SNP ID:
sf0708801086(Gbrowse)
Chromosome: chr07 Position: 8801086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 69.30% | 30.70% |
| All Indica | 796 | 50.25% | 49.75% |
| All Japonica | 487 | 96.92% | 3.08% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 71.85% | 28.15% |
| Indica II | 212 | 15.57% | 84.43% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708801086 | G->A | INTERGENIC | None |