Detailed information of SNP:
|
SNP ID:
sf0708819225(Gbrowse)
Chromosome: chr07 Position: 8819225 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 97.18% | 2.82% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708819225 | C->A | LOC_Os07g15290(LOC_Os07g15290.1) | INTRON |