Detailed information of SNP:
|
SNP ID:
sf0708823769(Gbrowse)
Chromosome: chr07 Position: 8823769 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 53.40% | 46.60% |
| All Indica | 790 | 91.27% | 8.73% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 370 | 92.16% | 7.84% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708823769 | C->T | LOC_Os07g15300(LOC_Os07g15300.1) | INTRON |