Detailed information of SNP:
|
SNP ID:
sf0708838987(Gbrowse)
Chromosome: chr07 Position: 8838987 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 52.31% | 47.69% |
| All Indica | 792 | 89.14% | 10.86% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 61 | 3.28% | 96.72% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708838987 | G->A | INTERGENIC | None |