Detailed information of SNP:
|
SNP ID:
sf0708876268(Gbrowse)
Chromosome: chr07 Position: 8876268 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 53.51% | 46.49% |
| All Indica | 792 | 90.91% | 9.09% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 205 | 71.71% | 28.29% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708876268 | T->A | LOC_Os07g15370(LOC_Os07g15370.1) | INTRON |
| sf0708876268 | T->A | LOC_Os07g15370(LOC_Os07g15370.2) | UTR_5_PRIME |