Detailed information of SNP:
|
SNP ID:
sf0708904625(Gbrowse)
Chromosome: chr07 Position: 8904625 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 96.27% | 3.73% |
| All Indica | 756 | 93.78% | 6.22% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 187 | 94.12% | 5.88% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708904625 | T->C | LOC_Os07g15410(LOC_Os07g15410.1) | INTRON |