Detailed information of SNP:
|
SNP ID:
sf0708972980(Gbrowse)
Chromosome: chr07 Position: 8972980 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 94.19% | 5.81% |
| All Indica | 763 | 90.17% | 9.83% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 187 | 80.21% | 19.79% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708972980 | G->T | INTERGENIC | None |