Detailed information of SNP:
|
SNP ID:
sf0708977866(Gbrowse)
Chromosome: chr07 Position: 8977866 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.81% | 43.19% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708977866 | T->C | LOC_Os07g15470(LOC_Os07g15470.1) | Non-Synonymous SNP |