Detailed information of SNP:
|
SNP ID:
sf0709018381(Gbrowse)
Chromosome: chr07 Position: 9018381 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 96.19% | 3.81% |
| All Indica | 792 | 100.00% | 0.00% |
| All Japonica | 431 | 93.50% | 6.50% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 99.67% | 0.33% |
| Tropical Japonica | 75 | 68.00% | 32.00% |
| Japonica Intermediate | 51 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709018381 | C->T | INTERGENIC | None |