Detailed information of SNP:
|
SNP ID:
sf0709098877(Gbrowse)
Chromosome: chr07 Position: 9098877 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 81.45% | 18.55% |
| All Indica | 737 | 68.11% | 31.89% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 358 | 89.66% | 10.34% |
| Indica II | 184 | 21.74% | 78.26% |
| Indica Intermediate | 195 | 72.31% | 27.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709098877 | T->A | LOC_Os07g15670(LOC_Os07g15670.1) | INTRON |
| sf0709098877 | T->A | LOC_Os07g15670(LOC_Os07g15670.2) | INTRON |
| sf0709098877 | T->A | LOC_Os07g15670(LOC_Os07g15670.3) | INTRON |