Detailed information of SNP:
|
SNP ID:
sf0709127661(Gbrowse)
Chromosome: chr07 Position: 9127661 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 96.20% | 3.80% |
| All Indica | 749 | 93.06% | 6.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 89.28% | 10.72% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 194 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709127661 | T->G | LOC_Os07g15710(LOC_Os07g15710.1) | INTRON |