Detailed information of SNP:
|
SNP ID:
sf0709145983(Gbrowse)
Chromosome: chr07 Position: 9145983 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 796 | 46.23% | 53.77% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 67.20% | 32.80% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709145983 | T->A | LOC_Os07g15760(LOC_Os07g15760.1) | Non-Synonymous SNP |