Detailed information of SNP:
|
SNP ID:
sf0709146684(Gbrowse)
Chromosome: chr07 Position: 9146684 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 50.65% | 49.35% |
| All Indica | 774 | 17.31% | 82.69% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 362 | 15.19% | 84.81% |
| Indica II | 209 | 8.61% | 91.39% |
| Indica Intermediate | 203 | 30.05% | 69.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709146684 | G->A | INTERGENIC | None |