Detailed information of SNP:
|
SNP ID:
sf0709158944(Gbrowse)
Chromosome: chr07 Position: 9158944 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 53.55% | 46.45% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 370 | 81.89% | 18.11% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709158944 | T->C | INTERGENIC | None |