Detailed information of SNP:
|
SNP ID:
sf0709162095(Gbrowse)
Chromosome: chr07 Position: 9162095 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.62% | 37.38% |
| All Indica | 798 | 39.60% | 60.40% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 210 | 27.62% | 72.38% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709162095 | T->A | LOC_Os07g15780(LOC_Os07g15780.1) | Non-Synonymous SNP |