Detailed information of SNP:
|
SNP ID:
sf0709171453(Gbrowse)
Chromosome: chr07 Position: 9171453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 51.46% | 48.54% |
| All Indica | 784 | 85.59% | 14.41% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 365 | 84.66% | 15.34% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 208 | 85.58% | 14.42% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709171453 | G->A | LOC_Os07g15800(LOC_Os07g15800.1) | INTRON |