Detailed information of SNP:
|
SNP ID:
sf0709171575(Gbrowse)
Chromosome: chr07 Position: 9171575 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 53.30% | 46.70% |
| All Indica | 791 | 87.61% | 12.39% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 367 | 86.10% | 13.90% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709171575 | A->T | LOC_Os07g15800(LOC_Os07g15800.1) | INTRON |