Detailed information of SNP:
|
SNP ID:
sf0709171676(Gbrowse)
Chromosome: chr07 Position: 9171676 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 51.74% | 48.26% |
| All Indica | 761 | 19.19% | 80.81% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 354 | 22.60% | 77.40% |
| Indica II | 204 | 14.71% | 85.29% |
| Indica Intermediate | 203 | 17.73% | 82.27% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709171676 | T->C | LOC_Os07g15800(LOC_Os07g15800.1) | INTRON |