Detailed information of SNP:
|
SNP ID:
sf0709173484(Gbrowse)
Chromosome: chr07 Position: 9173484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 50.75% | 49.25% |
| All Indica | 778 | 18.12% | 81.88% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 366 | 20.22% | 79.78% |
| Indica II | 204 | 14.22% | 85.78% |
| Indica Intermediate | 208 | 18.27% | 81.73% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709173484 | C->T | LOC_Os07g15800(LOC_Os07g15800.1) | INTRON |