Detailed information of SNP:
|
SNP ID:
sf0709174216(Gbrowse)
Chromosome: chr07 Position: 9174216 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 63.16% | 36.84% |
| All Indica | 767 | 91.26% | 8.74% |
| All Japonica | 490 | 27.55% | 72.45% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 181 | 84.53% | 15.47% |
| Temperate Japonica | 328 | 36.89% | 63.11% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709174216 | T->C | LOC_Os07g15800(LOC_Os07g15800.1) | Non-Synonymous SNP |