Detailed information of SNP:
|
SNP ID:
sf0709175894(Gbrowse)
Chromosome: chr07 Position: 9175894 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 52.24% | 47.76% |
| All Indica | 733 | 18.01% | 81.99% |
| All Japonica | 488 | 98.77% | 1.23% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 346 | 18.50% | 81.50% |
| Indica II | 208 | 13.46% | 86.54% |
| Indica Intermediate | 179 | 22.35% | 77.65% |
| Temperate Japonica | 328 | 98.78% | 1.22% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709175894 | T->C | LOC_Os07g15800(LOC_Os07g15800.1) | Non-Synonymous SNP |