Detailed information of SNP:
|
SNP ID:
sf0709175909(Gbrowse)
Chromosome: chr07 Position: 9175909 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 52.56% | 47.44% |
| All Indica | 790 | 87.09% | 12.91% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 205 | 74.15% | 25.85% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709175909 | T->C | LOC_Os07g15800(LOC_Os07g15800.1) | Non-Synonymous SNP |