Detailed information of SNP:
|
SNP ID:
sf0709198743(Gbrowse)
Chromosome: chr07 Position: 9198743 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 79.67% | 20.33% |
| All Indica | 795 | 66.29% | 33.71% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 45.43% | 54.57% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709198743 | G->A | INTERGENIC | None |