Detailed information of SNP:
|
SNP ID:
sf0709228140(Gbrowse)
Chromosome: chr07 Position: 9228140 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1165 | 60.09% | 39.91% |
| All Indica | 562 | 24.38% | 75.62% |
| All Japonica | 489 | 98.16% | 1.84% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 266 | 16.17% | 83.83% |
| Indica II | 146 | 34.93% | 65.07% |
| Indica Intermediate | 150 | 28.67% | 71.33% |
| Temperate Japonica | 328 | 98.78% | 1.22% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 54.29% | 45.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709228140 | A->G | INTERGENIC | None |