Detailed information of SNP:
|
SNP ID:
sf0709234835(Gbrowse)
Chromosome: chr07 Position: 9234835 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 92.47% | 7.53% |
| All Indica | 699 | 86.70% | 13.30% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 292 | 77.74% | 22.26% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 198 | 88.38% | 11.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709234835 | C->T | INTERGENIC | None |