Detailed information of SNP:
|
SNP ID:
sf0709253497(Gbrowse)
Chromosome: chr07 Position: 9253497 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 53.64% | 46.36% |
| All Indica | 794 | 90.05% | 9.95% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709253497 | G->A | LOC_Os07g15930(LOC_Os07g15930.1) | INTRON |