Detailed information of SNP:
|
SNP ID:
sf0709315648(Gbrowse)
Chromosome: chr07 Position: 9315648 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1205 | 78.01% | 21.99% |
| All Indica | 606 | 60.07% | 39.93% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 329 | 78.42% | 21.58% |
| Indica II | 135 | 17.04% | 82.96% |
| Indica Intermediate | 142 | 58.45% | 41.55% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709315648 | C->A | INTERGENIC | None |