Detailed information of SNP:
|
SNP ID:
sf0709321087(Gbrowse)
Chromosome: chr07 Position: 9321087 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 58.76% | 41.24% |
| All Indica | 735 | 28.71% | 71.29% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 348 | 32.18% | 67.82% |
| Indica II | 201 | 22.89% | 77.11% |
| Indica Intermediate | 186 | 28.49% | 71.51% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709321087 | A->G | LOC_Os07g16000(LOC_Os07g16000.1) | Synonymous |