Detailed information of SNP:
|
SNP ID:
sf0709321605(Gbrowse)
Chromosome: chr07 Position: 9321605 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.32% | 7.68% |
| All Indica | 787 | 87.29% | 12.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 96.50% | 3.50% |
| Indica II | 209 | 81.34% | 18.66% |
| Indica Intermediate | 207 | 76.81% | 23.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709321605 | C->A | LOC_Os07g16000(LOC_Os07g16000.1) | SNPs that introduce stop codons |