Detailed information of SNP:
|
SNP ID:
sf0709321768(Gbrowse)
Chromosome: chr07 Position: 9321768 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 55.31% | 44.69% |
| All Indica | 761 | 23.65% | 76.35% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 360 | 25.28% | 74.72% |
| Indica II | 204 | 22.55% | 77.45% |
| Indica Intermediate | 197 | 21.83% | 78.17% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709321768 | A->G | LOC_Os07g16000(LOC_Os07g16000.1) | Synonymous |