Detailed information of SNP:
|
SNP ID:
sf0709325102(Gbrowse)
Chromosome: chr07 Position: 9325102 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 52.48% | 47.52% |
| All Indica | 772 | 18.78% | 81.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 360 | 21.11% | 78.89% |
| Indica II | 210 | 20.95% | 79.05% |
| Indica Intermediate | 202 | 12.38% | 87.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709325102 | G->A | LOC_Os07g16000(LOC_Os07g16000.1) | Synonymous |