Detailed information of SNP:
|
SNP ID:
sf0709330072(Gbrowse)
Chromosome: chr07 Position: 9330072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1325 | 57.21% | 42.79% |
| All Indica | 717 | 25.38% | 74.62% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 321 | 29.28% | 70.72% |
| Indica II | 202 | 20.30% | 79.70% |
| Indica Intermediate | 194 | 24.23% | 75.77% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709330072 | A->G | LOC_Os07g16010(LOC_Os07g16010.1) | Non-Synonymous SNP |