Detailed information of SNP:
|
SNP ID:
sf0709338731(Gbrowse)
Chromosome: chr07 Position: 9338731 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1180 | 71.53% | 28.47% |
| All Indica | 580 | 44.14% | 55.86% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 312 | 32.05% | 67.95% |
| Indica II | 121 | 66.94% | 33.06% |
| Indica Intermediate | 147 | 51.02% | 48.98% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 81.82% | 18.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709338731 | C->G | INTERGENIC | None |