Detailed information of SNP:
|
SNP ID:
sf0709360083(Gbrowse)
Chromosome: chr07 Position: 9360083 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.03% | 5.97% |
| All Indica | 788 | 89.47% | 10.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709360083 | G->A | LOC_Os07g16054(LOC_Os07g16054.1) | INTRON |