Detailed information of SNP:
|
SNP ID:
sf0709434742(Gbrowse)
Chromosome: chr07 Position: 9434742 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.43% | 33.57% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709434742 | G->C | LOC_Os07g16190(LOC_Os07g16190.1) | INTRON |