Detailed information of SNP:
|
SNP ID:
sf0709435330(Gbrowse)
Chromosome: chr07 Position: 9435330 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.81% | 33.19% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 18.38% | 81.62% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 17.42% | 82.58% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709435330 | A->G | LOC_Os07g16190(LOC_Os07g16190.1) | Non-Synonymous SNP |