Detailed information of SNP:
|
SNP ID:
sf0709447538(Gbrowse)
Chromosome: chr07 Position: 9447538 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 98.16% | 1.84% |
| All Indica | 744 | 96.77% | 3.23% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 345 | 95.65% | 4.35% |
| Indica II | 199 | 99.50% | 0.50% |
| Indica Intermediate | 200 | 96.00% | 4.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709447538 | G->A | INTERGENIC | None |