Detailed information of SNP:
|
SNP ID:
sf0709452122(Gbrowse)
Chromosome: chr07 Position: 9452122 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.74% | 33.26% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 18.31% | 81.69% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709452122 | C->A | INTERGENIC | None |