Detailed information of SNP:
|
SNP ID:
sf0709479442(Gbrowse)
Chromosome: chr07 Position: 9479442 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 59.23% | 40.77% |
| All Indica | 745 | 92.62% | 7.38% |
| All Japonica | 445 | 7.87% | 92.13% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 327 | 96.94% | 3.06% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 301 | 6.31% | 93.69% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 52 | 17.31% | 82.69% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709479442 | A->G | INTERGENIC | None |