Detailed information of SNP:
|
SNP ID:
sf0709482578(Gbrowse)
Chromosome: chr07 Position: 9482578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 93.34% | 6.66% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 88.80% | 11.20% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 48.35% | 51.65% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709482578 | G->A | INTERGENIC | None |