Detailed information of SNP:
|
SNP ID:
sf0709508560(Gbrowse)
Chromosome: chr07 Position: 9508560 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 62.43% | 37.57% |
| All Indica | 751 | 93.21% | 6.79% |
| All Japonica | 485 | 18.14% | 81.86% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 358 | 94.69% | 5.31% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 186 | 90.32% | 9.68% |
| Temperate Japonica | 331 | 16.31% | 83.69% |
| Tropical Japonica | 88 | 10.23% | 89.77% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709508560 | T->C | LOC_Os07g16290(LOC_Os07g16290.1) | INTRON |